STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174858Paraoxonase 1. (355 aa)    
Predicted Functional Partners:
LOC101175104
Uncharacterized protein.
   
  0.962
nfyc
Nuclear transcription factor Y, gamma.
    
   0.874
HDGFL3
HDGF like 3.
      
 0.534
srrd
SRR1 domain containing.
      
 0.531
LOC101170857
GRAM domain-containing protein.
      
 0.526
LOC101169010
Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.
      
 0.502
bche
Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.
      
 0.500
apof
Apolipoprotein F.
      
 0.464
dhx40
DEAH (Asp-Glu-Ala-His) box polypeptide 40.
      
 0.463
chrac1
Chromatin accessibility complex subunit 1.
    
   0.420
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.