STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smad3Mothers against decapentaplegic homolog. (425 aa)    
Predicted Functional Partners:
SMAD4
Mothers against decapentaplegic homolog.
   
0.985
LOC101173916
Mothers against decapentaplegic homolog.
   
0.984
LOC101163504
Mothers against decapentaplegic homolog.
   
0.984
smad1
Mothers against decapentaplegic homolog.
  
0.961
smad9
Mothers against decapentaplegic homolog.
  
0.961
LOC101160003
Mothers against decapentaplegic homolog.
  
0.961
LOC101170165
Mothers against decapentaplegic homolog.
    
0.957
smad6
Mothers against decapentaplegic homolog.
    
0.957
smad7
Mothers against decapentaplegic homolog.
    
0.957
foxh1
Forkhead box H1.
    
 0.909
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.