Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl28Mitochondrial ribosomal protein L28. (251 aa)    
Predicted Functional Partners:
mrpl16
Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
   
 0.990
mrpl2
Mitochondrial ribosomal protein L2.
   
 0.988
mrpl3
Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 0.987
mrpl41
Uncharacterized protein.
   
  0.987
mrpl9
Mitochondrial ribosomal protein L9.
   
  0.986
mrpl47
Mitochondrial ribosomal protein L47.
   
 0.986
mrpl32
Mitochondrial ribosomal protein L32.
   
  0.985
mrpl58
Mitochondrial ribosomal protein L58.
   
  0.985
mrpl10
Mitochondrial ribosomal protein L10.
   
  0.985
malsu1
Uncharacterized protein.
   
  0.984
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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