Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162858Uncharacterized protein. (548 aa)    
Predicted Functional Partners:
slc39a7
Solute carrier family 39 member 7.
  
 0.651
slc30a9
Solute carrier family 30 member 9.
  
 
 0.649
slc30a6
Solute carrier family 30 member 6.
    
 
 0.617
LOC101163600
Uncharacterized protein.
   
 
 0.611
slc35b3
Solute carrier family 35 member B3.
  
 
 0.582
slc35c1
Solute carrier family 35 member C1.
   
  
 0.573
nipa1
NIPA magnesium transporter 1.
      
 0.568
slc39a8
Solute carrier family 39 member 8.
  
 0.561
LOC101175073
Solute carrier family 11 member 2.
  
 
 0.540
LOC101155197
Uncharacterized protein.
  
 
 0.540
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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