STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tapbpUncharacterized protein. (447 aa)    
Predicted Functional Partners:
abcb3
Uncharacterized protein.
   
 0.990
LOC101165513
Transporter associated with antigen processing, subunit type t, teleost specific.
   
 0.979
tap1
Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP).
   
 0.964
LOC101160304
Calreticulin.
    
 0.963
LOC101162115
Calreticulin.
    
 0.963
LOC101169735
Calreticulin.
    
 0.963
pdia3
Protein disulfide-isomerase.
    
 0.961
rpa2
Replication protein A2.
   
 0.934
tapbpl
TAP binding protein like.
  
 
0.927
pdia4
Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family.
    
 0.894
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.