trmt2b protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

trmt2b

tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (482 aa)

Predicted Functional Partners:

trmt61a

0.778

dus1l

0.776

trmt11

0.764

tbl3

0.698

dus3l

0.695

bop1

0.692

cep152

0.692

nat10

0.670

trmu

0.664

trmt61b

0.649

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bop1	dus3l	ENSORLP00000002076	ENSORLP00000025920	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	tRNA-dihydrouridine(47) synthase [NAD(P)(+)].	0.654
bop1	nat10	ENSORLP00000002076	ENSORLP00000006083	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.838
bop1	tbl3	ENSORLP00000002076	ENSORLP00000040308	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Transducin (beta)-like 3.	0.938
bop1	trmt11	ENSORLP00000002076	ENSORLP00000007263	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	tRNA methyltransferase 11 homolog.	0.439
bop1	trmt2b	ENSORLP00000002076	ENSORLP00000008570	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.692
bop1	trmt61a	ENSORLP00000002076	ENSORLP00000038406	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.727
bop1	trmt61b	ENSORLP00000002076	ENSORLP00000031439	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	tRNA methyltransferase 61B.	0.625
cep152	dus3l	ENSORLP00000006498	ENSORLP00000025920	Centrosomal protein 152.	tRNA-dihydrouridine(47) synthase [NAD(P)(+)].	0.654
cep152	nat10	ENSORLP00000006498	ENSORLP00000006083	Centrosomal protein 152.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.835
cep152	tbl3	ENSORLP00000006498	ENSORLP00000040308	Centrosomal protein 152.	Transducin (beta)-like 3.	0.865
cep152	trmt11	ENSORLP00000006498	ENSORLP00000007263	Centrosomal protein 152.	tRNA methyltransferase 11 homolog.	0.439
cep152	trmt2b	ENSORLP00000006498	ENSORLP00000008570	Centrosomal protein 152.	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.692
cep152	trmt61a	ENSORLP00000006498	ENSORLP00000038406	Centrosomal protein 152.	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.727
cep152	trmt61b	ENSORLP00000006498	ENSORLP00000031439	Centrosomal protein 152.	tRNA methyltransferase 61B.	0.625
dus1l	dus3l	ENSORLP00000026947	ENSORLP00000025920	Dihydrouridine synthase 1-like (S. cerevisiae).	tRNA-dihydrouridine(47) synthase [NAD(P)(+)].	0.498
dus1l	nat10	ENSORLP00000026947	ENSORLP00000006083	Dihydrouridine synthase 1-like (S. cerevisiae).	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.669
dus1l	tbl3	ENSORLP00000026947	ENSORLP00000040308	Dihydrouridine synthase 1-like (S. cerevisiae).	Transducin (beta)-like 3.	0.640
dus1l	trmt11	ENSORLP00000026947	ENSORLP00000007263	Dihydrouridine synthase 1-like (S. cerevisiae).	tRNA methyltransferase 11 homolog.	0.893
dus1l	trmt2b	ENSORLP00000026947	ENSORLP00000008570	Dihydrouridine synthase 1-like (S. cerevisiae).	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.776
dus1l	trmt61a	ENSORLP00000026947	ENSORLP00000038406	Dihydrouridine synthase 1-like (S. cerevisiae).	tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.	0.634

page 1 of 5

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About