papss1 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

papss1

3'-phosphoadenosine 5'-phosphosulfate synthase 1. (624 aa)

Predicted Functional Partners:

suox

0.978

impad1

0.962

bpnt1

0.962

LOC101171603

0.900

LOC101170939

0.900

eef1a

0.900

hbs1l

0.900

LOC100049338

0.900

LOC101175535

0.900

Flad1

0.887

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Flad1	LOC101171603	ENSORLP00000012257	ENSORLP00000007856	MoCF_biosynth domain-containing protein.	3'-phosphoadenosine 5'-phosphosulfate synthase 2a.	0.887
Flad1	bpnt1	ENSORLP00000012257	ENSORLP00000038537	MoCF_biosynth domain-containing protein.	Bisphosphate nucleotidase 1.	0.450
Flad1	impad1	ENSORLP00000012257	ENSORLP00000016675	MoCF_biosynth domain-containing protein.	Inositol monophosphatase domain containing 1.	0.450
Flad1	papss1	ENSORLP00000012257	ENSORLP00000008587	MoCF_biosynth domain-containing protein.	3'-phosphoadenosine 5'-phosphosulfate synthase 1.	0.887
LOC100049338	LOC101170939	ENSORLP00000023779	ENSORLP00000009506	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.901
LOC100049338	LOC101171603	ENSORLP00000023779	ENSORLP00000007856	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	3'-phosphoadenosine 5'-phosphosulfate synthase 2a.	0.900
LOC100049338	eef1a	ENSORLP00000023779	ENSORLP00000009543	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.	0.901
LOC100049338	papss1	ENSORLP00000023779	ENSORLP00000008587	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	3'-phosphoadenosine 5'-phosphosulfate synthase 1.	0.900
LOC101170939	LOC100049338	ENSORLP00000009506	ENSORLP00000023779	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.901
LOC101170939	LOC101171603	ENSORLP00000009506	ENSORLP00000007856	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	3'-phosphoadenosine 5'-phosphosulfate synthase 2a.	0.900
LOC101170939	eef1a	ENSORLP00000009506	ENSORLP00000009543	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.	0.900
LOC101170939	papss1	ENSORLP00000009506	ENSORLP00000008587	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	3'-phosphoadenosine 5'-phosphosulfate synthase 1.	0.900
LOC101171603	Flad1	ENSORLP00000007856	ENSORLP00000012257	3'-phosphoadenosine 5'-phosphosulfate synthase 2a.	MoCF_biosynth domain-containing protein.	0.887
LOC101171603	LOC100049338	ENSORLP00000007856	ENSORLP00000023779	3'-phosphoadenosine 5'-phosphosulfate synthase 2a.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.900
LOC101171603	LOC101170939	ENSORLP00000007856	ENSORLP00000009506	3'-phosphoadenosine 5'-phosphosulfate synthase 2a.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.900
LOC101171603	LOC101175535	ENSORLP00000007856	ENSORLP00000045813	3'-phosphoadenosine 5'-phosphosulfate synthase 2a.	G1 to S phase transition 1, like.	0.900
LOC101171603	bpnt1	ENSORLP00000007856	ENSORLP00000038537	3'-phosphoadenosine 5'-phosphosulfate synthase 2a.	Bisphosphate nucleotidase 1.	0.962
LOC101171603	eef1a	ENSORLP00000007856	ENSORLP00000009543	3'-phosphoadenosine 5'-phosphosulfate synthase 2a.	Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.	0.900
LOC101171603	hbs1l	ENSORLP00000007856	ENSORLP00000020730	3'-phosphoadenosine 5'-phosphosulfate synthase 2a.	HBS1-like translational GTPase.	0.900
LOC101171603	impad1	ENSORLP00000007856	ENSORLP00000016675	3'-phosphoadenosine 5'-phosphosulfate synthase 2a.	Inositol monophosphatase domain containing 1.	0.962