Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101164517Ankyrin repeat domain 33ba. (535 aa)    
Predicted Functional Partners:
LOC101168439
Par-6 family cell polarity regulator alpha.
   
 0.501
pard6b
Par-6 partitioning defective 6 homolog beta (C. elegans).
   
 0.501
LOC101169467
Par-6 family cell polarity regulator gamma b.
   
 0.501
mettl21a
Methyltransferase like 21A.
      
 0.498
lnx1
Ligand of numb-protein X 1.
   
 0.481
LOC101170936
Ligand of numb-protein X 2b.
   
 0.481
H2LES7_ORYLA
Uncharacterized protein.
   
 0.481
MPDZ
Multiple PDZ domain crumbs cell polarity complex component.
   
 0.481
MPDZ-2
Uncharacterized protein.
   
 0.481
lnx2
Ligand of numb-protein X 2a.
   
 0.481
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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