LOC101159214 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101159214

Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family. (800 aa)

Predicted Functional Partners:

LOC101169874

0.822

LOC101175170

0.822

dlgap3

0.791

LOC101172563

0.789

cask

0.789

mdm2

0.771

gria2

0.740

LOC101157661

0.736

LRFN2

0.736

nlgn1

0.714

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101157661	LOC101159214	ENSORLP00000022281	ENSORLP00000008601	Leucine rich repeat and fibronectin type III domain containing 2b.	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	0.736
LOC101157661	LOC101169874	ENSORLP00000022281	ENSORLP00000017802	Leucine rich repeat and fibronectin type III domain containing 2b.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	0.626
LOC101157661	LOC101175170	ENSORLP00000022281	ENSORLP00000027549	Leucine rich repeat and fibronectin type III domain containing 2b.	Uncharacterized protein.	0.626
LOC101159214	LOC101157661	ENSORLP00000008601	ENSORLP00000022281	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	Leucine rich repeat and fibronectin type III domain containing 2b.	0.736
LOC101159214	LOC101169874	ENSORLP00000008601	ENSORLP00000017802	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	0.822
LOC101159214	LOC101172563	ENSORLP00000008601	ENSORLP00000006053	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.789
LOC101159214	LOC101175170	ENSORLP00000008601	ENSORLP00000027549	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	Uncharacterized protein.	0.822
LOC101159214	LRFN2	ENSORLP00000008601	ENSORLP00000022819	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	Leucine rich repeat and fibronectin type III domain containing 2.	0.736
LOC101159214	cask	ENSORLP00000008601	ENSORLP00000031235	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	Uncharacterized protein; Belongs to the MAGUK family.	0.789
LOC101159214	dlgap3	ENSORLP00000008601	ENSORLP00000006974	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	Discs, large (Drosophila) homolog-associated protein 3.	0.791
LOC101159214	gria2	ENSORLP00000008601	ENSORLP00000025224	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	Uncharacterized protein.	0.740
LOC101159214	mdm2	ENSORLP00000008601	ENSORLP00000034706	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	MDM2 proto-oncogene.	0.771
LOC101159214	nlgn1	ENSORLP00000008601	ENSORLP00000018058	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	Neuroligin 1.	0.714
LOC101169874	LOC101157661	ENSORLP00000017802	ENSORLP00000022281	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Leucine rich repeat and fibronectin type III domain containing 2b.	0.626
LOC101169874	LOC101159214	ENSORLP00000017802	ENSORLP00000008601	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.	0.822
LOC101169874	LOC101172563	ENSORLP00000017802	ENSORLP00000006053	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.851
LOC101169874	LOC101175170	ENSORLP00000017802	ENSORLP00000027549	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Uncharacterized protein.	0.900
LOC101169874	LRFN2	ENSORLP00000017802	ENSORLP00000022819	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Leucine rich repeat and fibronectin type III domain containing 2.	0.637
LOC101169874	cask	ENSORLP00000017802	ENSORLP00000031235	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Uncharacterized protein; Belongs to the MAGUK family.	0.851
LOC101169874	dlgap3	ENSORLP00000017802	ENSORLP00000006974	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Discs, large (Drosophila) homolog-associated protein 3.	0.667