ptgir protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ptgir

Prostaglandin I2 receptor; Belongs to the G-protein coupled receptor 1 family. (348 aa)

Predicted Functional Partners:

GNAS

0.951

LOC101166373

0.951

gng8

0.668

H2LGY1_ORYLA

0.545

LOC111946430

0.538

LOC101168467

0.537

gng3

0.537

LOC101155207-2

0.537

ENSORLP00000028479

0.533

GNAL

0.533

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000028479	GNAL	ENSORLP00000028479	ENSORLP00000028760	Uncharacterized protein.	G protein subunit alpha L.	0.540
ENSORLP00000028479	GNAS	ENSORLP00000028479	ENSORLP00000004563	Uncharacterized protein.	Uncharacterized protein.	0.540
ENSORLP00000028479	H2LGY1_ORYLA	ENSORLP00000028479	ENSORLP00000005234	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.795
ENSORLP00000028479	LOC101155207-2	ENSORLP00000028479	ENSORLP00000039363	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.806
ENSORLP00000028479	LOC101166373	ENSORLP00000028479	ENSORLP00000007194	Uncharacterized protein.	GNAS complex locus.	0.540
ENSORLP00000028479	LOC101168467	ENSORLP00000028479	ENSORLP00000020790	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.837
ENSORLP00000028479	LOC111946430	ENSORLP00000028479	ENSORLP00000030431	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.806
ENSORLP00000028479	gng3	ENSORLP00000028479	ENSORLP00000035224	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.794
ENSORLP00000028479	gng8	ENSORLP00000028479	ENSORLP00000035318	Uncharacterized protein.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.808
ENSORLP00000028479	ptgir	ENSORLP00000028479	ENSORLP00000008606	Uncharacterized protein.	Prostaglandin I2 receptor; Belongs to the G-protein coupled receptor 1 family.	0.533
GNAL	ENSORLP00000028479	ENSORLP00000028760	ENSORLP00000028479	G protein subunit alpha L.	Uncharacterized protein.	0.540
GNAL	GNAS	ENSORLP00000028760	ENSORLP00000004563	G protein subunit alpha L.	Uncharacterized protein.	0.902
GNAL	H2LGY1_ORYLA	ENSORLP00000028760	ENSORLP00000005234	G protein subunit alpha L.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.795
GNAL	LOC101155207-2	ENSORLP00000028760	ENSORLP00000039363	G protein subunit alpha L.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.806
GNAL	LOC101166373	ENSORLP00000028760	ENSORLP00000007194	G protein subunit alpha L.	GNAS complex locus.	0.902
GNAL	LOC101168467	ENSORLP00000028760	ENSORLP00000020790	G protein subunit alpha L.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.837
GNAL	LOC111946430	ENSORLP00000028760	ENSORLP00000030431	G protein subunit alpha L.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.806
GNAL	gng3	ENSORLP00000028760	ENSORLP00000035224	G protein subunit alpha L.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.794
GNAL	gng8	ENSORLP00000028760	ENSORLP00000035318	G protein subunit alpha L.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.808
GNAL	ptgir	ENSORLP00000028760	ENSORLP00000008606	G protein subunit alpha L.	Prostaglandin I2 receptor; Belongs to the G-protein coupled receptor 1 family.	0.533