STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164256Si:dkey-33c9.6. (822 aa)    
Predicted Functional Partners:
afdn
Afadin, adherens junction formation factor a.
    
 
 0.745
ephb3
Receptor protein-tyrosine kinase.
    
 0.703
epha7
Eph receptor A7.
    
 0.700
erbin
Erbb2 interacting protein.
    
 0.671
grb2
Growth factor receptor-bound protein 2b.
    
 0.667
H2MTB4_ORYLA
Syntrophin, gamma 2.
      
 0.653
pick1
Protein interacting with prkca 1.
      
 0.653
exoc4
Exocyst complex component 4.
      
 0.651
LOC101165461
Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.581
H2L8C2_ORYLA
Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.581
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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