Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM55Tripartite motif containing 55. (481 aa)    
Predicted Functional Partners:
LOC101156857
Tripartite motif containing 55b.
  
  
 
0.901
sqstm1
Sequestosome 1.
    
 0.607
nkain2
Sodium/potassium transporting ATPase interacting 2.
      
 0.556
ahi1
Abelson helper integration site 1.
    
 0.524
trim23
Tripartite motif containing 23.
    
 0.522
LOC101169703
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.506
ube2i
Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.506
bhlhe22
Basic helix-loop-helix family, member e22.
      
 0.482
zdhhc22
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
   0.476
rps27a
Ribosomal protein S27a.
    
  0.451
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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