wscd2 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

wscd2

WSC domain containing 2. (562 aa)

Predicted Functional Partners:

fancm

0.954

cenpx

0.812

cenpq

0.676

cenpk

0.665

cenpm

0.665

H2MZX5_ORYLA

0.662

cenpn

0.640

dhx58

0.635

ifih1

0.635

ercc4

0.625

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2MZX5_ORYLA	cenpk	ENSORLP00000024654	ENSORLP00000015913	Centromere protein P.	Centromere protein K.	0.996
H2MZX5_ORYLA	cenpm	ENSORLP00000024654	ENSORLP00000029786	Centromere protein P.	Proliferation associated nuclear element.	0.996
H2MZX5_ORYLA	cenpn	ENSORLP00000024654	ENSORLP00000012008	Centromere protein P.	Centromere protein N.	0.993
H2MZX5_ORYLA	cenpq	ENSORLP00000024654	ENSORLP00000006319	Centromere protein P.	Uncharacterized protein.	0.999
H2MZX5_ORYLA	cenpx	ENSORLP00000024654	ENSORLP00000037961	Centromere protein P.	Uncharacterized protein.	0.896
H2MZX5_ORYLA	wscd2	ENSORLP00000024654	ENSORLP00000008619	Centromere protein P.	WSC domain containing 2.	0.662
cenpk	H2MZX5_ORYLA	ENSORLP00000015913	ENSORLP00000024654	Centromere protein K.	Centromere protein P.	0.996
cenpk	cenpm	ENSORLP00000015913	ENSORLP00000029786	Centromere protein K.	Proliferation associated nuclear element.	0.999
cenpk	cenpn	ENSORLP00000015913	ENSORLP00000012008	Centromere protein K.	Centromere protein N.	0.998
cenpk	cenpq	ENSORLP00000015913	ENSORLP00000006319	Centromere protein K.	Uncharacterized protein.	0.994
cenpk	cenpx	ENSORLP00000015913	ENSORLP00000037961	Centromere protein K.	Uncharacterized protein.	0.906
cenpk	wscd2	ENSORLP00000015913	ENSORLP00000008619	Centromere protein K.	WSC domain containing 2.	0.665
cenpm	H2MZX5_ORYLA	ENSORLP00000029786	ENSORLP00000024654	Proliferation associated nuclear element.	Centromere protein P.	0.996
cenpm	cenpk	ENSORLP00000029786	ENSORLP00000015913	Proliferation associated nuclear element.	Centromere protein K.	0.999
cenpm	cenpn	ENSORLP00000029786	ENSORLP00000012008	Proliferation associated nuclear element.	Centromere protein N.	0.999
cenpm	cenpq	ENSORLP00000029786	ENSORLP00000006319	Proliferation associated nuclear element.	Uncharacterized protein.	0.997
cenpm	cenpx	ENSORLP00000029786	ENSORLP00000037961	Proliferation associated nuclear element.	Uncharacterized protein.	0.888
cenpm	wscd2	ENSORLP00000029786	ENSORLP00000008619	Proliferation associated nuclear element.	WSC domain containing 2.	0.665
cenpn	H2MZX5_ORYLA	ENSORLP00000012008	ENSORLP00000024654	Centromere protein N.	Centromere protein P.	0.993
cenpn	cenpk	ENSORLP00000012008	ENSORLP00000015913	Centromere protein N.	Centromere protein K.	0.998