Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164509Netrin 5. (810 aa)    
Predicted Functional Partners:
dcc
DCC netrin 1 receptor.
    
 0.922
unc5b
Unc-5 netrin receptor B.
    
 0.879
neo1
Neogenin 1b.
    
 0.850
igdcc4
Immunoglobulin superfamily, DCC subclass, member 4.
    
 0.839
LOC101157960
Unc-5 netrin receptor C.
    
 0.785
LOC101174433
Unc-5 netrin receptor C.
    
 0.785
unc5a
Unc-5 netrin receptor A.
    
 0.744
draxin
Dorsal inhibitory axon guidance protein.
    
 
 0.743
LOC101158128
Down syndrome cell adhesion molecule a.
   
 0.703
LOC101165578
Down syndrome cell adhesion molecule like 1.
   
 0.703
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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