STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164509Netrin 5. (810 aa)    
Predicted Functional Partners:
dcc
DCC netrin 1 receptor.
    
 0.899
neo1
Neogenin 1b.
    
 0.801
igdcc4
Immunoglobulin superfamily, DCC subclass, member 4.
    
 0.790
unc5b
Unc-5 netrin receptor B.
    
 0.696
draxin
Dorsal inhibitory axon guidance protein.
    
 
 0.659
LOC101161737
Si:ch211-57n23.4.
    
 0.593
ENSORLP00000026301
Ig-like domain-containing protein.
    
 0.593
ENSORLP00000027091
Uncharacterized protein.
    
 0.593
igdcc3
Immunoglobulin superfamily, DCC subclass, member 3.
    
 0.593
fndc1
Fibronectin type III domain containing 1.
    
 0.581
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.