STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ficdFIC domain containing. (454 aa)    
Predicted Functional Partners:
hspa5
Uncharacterized protein; Belongs to the heat shock protein 70 family.
   
 
 0.918
sart3
Spliceosome associated factor 3, U4/U6 recycling protein.
      
 0.848
ripk4
Receptor-interacting serine-threonine kinase 4.
      
 0.822
ptchd1
Patched domain containing 1.
      
 0.757
trmt11
tRNA methyltransferase 11 homolog.
      
 0.753
ankef1
Ankyrin repeat and EF-hand domain containing 1a.
      
 0.742
LOC101161311
Protein kinase C binding protein 1, like.
      
 0.716
enc1
Ectodermal-neural cortex 1.
      
 0.698
plagl2
Pleiomorphic adenoma gene-like 2.
      
 0.681
H2LU76_ORYLA
SH3 domain containing 19.
      
 0.625
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.