STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164387Tripartite motif containing 66. (1216 aa)    
Predicted Functional Partners:
trim44
Tripartite motif containing 44.
      
 0.605
LOC101172650
Tripartite motif containing 62, tandem duplicate 1.
      
 0.602
LOC101163515
Uncharacterized protein.
      
 0.535
trim8
Tripartite motif containing 8b.
      
 0.535
CBX1
Uncharacterized protein.
    
 0.497
LOC100049459
Chromobox homolog 3a (HP1 gamma homolog, Drosophila).
    
 0.497
cbx5
Chromobox homolog 5 (HP1 alpha homolog, Drosophila).
    
 0.497
CBX1-2
Chromobox homolog 1b (HP1 beta homolog Drosophila).
    
 0.497
cnst
Consortin_C domain-containing protein.
  
     0.470
bbox1
Butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1.
      
 0.409
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.