Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155712Cadherin-related family member 1a. (871 aa)    
Predicted Functional Partners:
ttc8
Tetratricopeptide repeat domain 8.
    
 
 0.599
LOC101171502
Uncharacterized protein.
    
 0.591
LOC101173369
Junction plakoglobin a.
    
 0.591
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.591
lgmn
Legumain.
      
 0.578
LOC101166010
Tectorin beta.
      
 0.571
ctnna1
Catenin (cadherin-associated protein), alpha 1.
   
 0.538
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.538
LOC101161503
Uncharacterized protein.
   
 0.538
LOC101167616
Usher syndrome 1C.
   
 
 0.531
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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