STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156762Leucine-rich repeat, immunoglobulin-like and transmembrane domains 2. (574 aa)    
Predicted Functional Partners:
ccdc126
Coiled-coil domain containing 126.
      
 0.711
LOC101160145
Family with sequence similarity 169 member B.
    
 0.621
serpine3
Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3; Belongs to the serpin family.
     
 0.605
LOC101155954
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a.
   
 0.578
lrit1
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b.
   
 0.578
mansc4
MANSC domain-containing protein.
      
 0.574
ddx28
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
    
 0.542
LOC101171744
Ankyrin repeat domain 33Aa.
    
 0.502
LOC101173138
Ankyrin repeat domain 33Ab.
    
 0.502
LOC101159772
Potassium inwardly-rectifying channel, subfamily J, member 14.
     
 0.501
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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