STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101165007Si:dkey-19b23.13; Belongs to the peptidase C2 family. (705 aa)    
Predicted Functional Partners:
capns1
Calpain, small subunit 1 b.
 
 
 0.724
LOC101165329
Uncharacterized protein.
 
 
 0.720
cast
Uncharacterized protein.
   
 0.548
LOC101164789
Uncharacterized protein; Belongs to the tropomyosin family.
   
  
 0.506
H2M6E4_ORYLA
Uncharacterized protein.
   
 
  0.492
LOC101165932
Intersectin 2a.
   
 
  0.492
ENSORLP00000034742
Uncharacterized protein.
   
 
  0.492
ENSORLP00000036645
EH domain-containing protein.
   
 
  0.492
ENSORLP00000041578
SH3 domain-containing protein.
   
 
  0.492
LOC100301589
Defensin, beta-like 2.
      
 0.455
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.