STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155954Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a. (651 aa)    
Predicted Functional Partners:
Wdr90
WD_REPEATS_REGION domain-containing protein.
    
  0.710
ENSORLP00000042816
Uncharacterized protein.
    
  0.710
ntng1
Netrin g1a.
    
 0.703
LOC105357770
Vav 3 guanine nucleotide exchange factor b.
    
 0.703
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.674
frmpd2
FERM and PDZ domain containing 2.
    
 0.653
traf7
TNF receptor-associated factor 7.
    
 0.653
tonsl
Tonsoku-like, DNA repair protein.
    
 0.631
gpsm2
Uncharacterized protein.
    
 
 0.630
ENSORLP00000032656
Uncharacterized protein.
    
 0.618
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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