STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167550Ankyrin repeat and KH domain containing 1. (2658 aa)    
Predicted Functional Partners:
bap1
Ubiquitin carboxyl-terminal hydrolase.
    
   0.769
nrros
Negative regulator of reactive oxygen species.
   
  
 0.659
recql4
RecQ helicase-like 4.
    
   0.657
eif4ebp3
Eukaryotic translation initiation factor 4E binding protein 3.
      
 0.646
H2M2I4_ORYLA
Uncharacterized protein.
   
    0.605
cog3
Component of oligomeric golgi complex 3.
   
    0.605
LOC101171962
BHLH domain-containing protein.
   
    0.605
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
    0.605
uchl5
Ubiquitin carboxyl-terminal hydrolase.
    
   0.598
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
    
 
 0.585
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.