STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167550Ankyrin repeat and KH domain containing 1. (2658 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
    0.676
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
      
 0.595
nrros
Negative regulator of reactive oxygen species.
   
  
 0.593
nipbl
Nipped-B protein.
   
    0.568
LOC101156754
Nipped-B protein.
   
    0.568
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
  
 0.544
hells
Helicase, lymphoid specific.
   
    0.532
chd1l
Chromodomain helicase DNA binding protein 1-like.
   
    0.532
ppp1r3c
Protein phosphatase 1 regulatory subunit.
   
  
 0.528
H2M2I4_ORYLA
Uncharacterized protein.
   
  
 0.520
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.