STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Npas1Neuronal PAS domain protein 1. (310 aa)    
Predicted Functional Partners:
arnt
Aryl hydrocarbon receptor nuclear translocator.
   
 0.880
vhl
Von Hippel-Lindau tumor suppressor.
    
 0.810
ubxn7
UBX domain protein 7.
    
  0.773
ELOB
Ubiquitin-like domain-containing protein.
    
 0.740
cul2
Cullin 2; Belongs to the cullin family.
    
 0.718
LOC101164580
Egl-9 family hypoxia-inducible factor 2.
    
 0.687
egln3
Egl-9 family hypoxia-inducible factor 3.
    
 0.687
egln1
Egl-9 family hypoxia-inducible factor 1a.
    
 0.687
LOC101172430
Neuronal PAS domain protein 2.
   
0.639
eloc
Elongin C paralog b; Belongs to the SKP1 family.
    
 0.611
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.