STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LRN0_ORYLATubulin domain-containing protein. (109 aa)    
Predicted Functional Partners:
ENSORLP00000043694
Tubulin domain-containing protein; Belongs to the tubulin family.
 
 0.784
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
   
 0.736
mad2l1
HORMA domain-containing protein.
   
 0.701
Wdr90
WD_REPEATS_REGION domain-containing protein.
   
 0.701
ENSORLP00000042816
Uncharacterized protein.
   
 0.701
LOC101155370
Doublecortin-like kinase 1b.
    
 
 0.689
LOC101167140
Doublecortin-like kinase 1a.
    
 
 0.689
cenpm
Proliferation associated nuclear element.
   
 0.676
cenpk
Centromere protein K.
   
 0.672
kif11
Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 
 0.671
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.