STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
afg3l2AFG3-like AAA ATPase 2. (801 aa)    
Predicted Functional Partners:
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
0.894
phb
Prohibitin.
   
 0.888
clpx
Caseinolytic mitochondrial matrix peptidase chaperone subunit b.
  
  
 0.852
phb2
Prohibitin.
   
 0.843
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
 
 0.827
timmdc1
Translocase of inner mitochondrial membrane domain containing 1.
   
   0.822
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.765
mrpl13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.744
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.739
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
   
 
 0.734
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.