STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcdh7Protocadherin 7b. (1261 aa)    
Predicted Functional Partners:
adamts16
ADAM metallopeptidase with thrombospondin type 1 motif, 16.
    
 
 0.541
pi15
Peptidase inhibitor 15a; Belongs to the CRISP family.
      
 0.514
gpc2
Glypican 2; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
      
 0.507
creb3l2
cAMP responsive element binding protein 3-like 2.
      
 0.502
enpep
Aminopeptidase.
     
 0.465
tie1
Tyrosine kinase with immunoglobulin-like and EGF-like domains 1.
    
 
 0.463
ocstamp
Osteoclast stimulatory transmembrane protein.
      
 0.437
epha3
Eph receptor A3.
   
 0.424
LOC101173369
Junction plakoglobin a.
    
 0.415
nid1
Nidogen 1a.
      
 0.403
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.