Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcdh7Protocadherin 7b. (1261 aa)    
Predicted Functional Partners:
PCDH20
Protocadherin 20.
   
  0.625
pi15
Peptidase inhibitor 15a; Belongs to the CRISP family.
      
 0.594
LOC101159857
Angiomotin like 2b.
     
 0.510
LOC101159717
Rho-associated, coiled-coil containing protein kinase 2b; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.
    
 0.499
sorbs3
Sorbin and SH3 domain containing 3.
     
 0.499
gpc2
Glypican 2; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
    
 
 0.495
adamts16
ADAM metallopeptidase with thrombospondin type 1 motif, 16.
    
 
 0.490
VANGL2
Vang-like protein.
    
 0.487
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
     
 0.483
aplp2
Amyloid beta (A4) precursor-like protein 2.
    
  0.482
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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