STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155857RUN and FYVE domain containing 1. (761 aa)    
Predicted Functional Partners:
rab4a
RAB4a, member RAS oncogene family.
    
 0.965
LOC101159839
RAB4B, member RAS oncogene family.
    
 0.668
LOC101162540
RAB14, member RAS oncogene family.
    
 0.620
LOC101167092
Uncharacterized protein.
    
 0.620
rufy2
RUN and FYVE domain containing 2.
  
 
 
0.588
c1h17orf67
Si:dkey-31g6.6.
      
 0.560
H2LBZ6_ORYLA
TXK tyrosine kinase.
    
  0.557
itk
Tyrosine-protein kinase.
    
  0.557
btk
Tyrosine-protein kinase.
    
  0.557
LOC101170709
Tyrosine-protein kinase.
    
  0.557
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.