STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chrdl2Chordin-like 2. (445 aa)    
Predicted Functional Partners:
LOC101167327
FAM20C golgi associated secretory pathway kinase.
    
  0.509
LOC101163577
FAM20C golgi associated secretory pathway kinase a.
    
  0.509
bmp2
TGF_BETA_2 domain-containing protein.
    
 0.496
bmp4
Bone morphogenetic protein 4.
    
 0.496
LOC101163346
Bone morphogenetic protein 16.
    
 0.496
ENSORLP00000032656
Uncharacterized protein.
   
 0.472
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.442
LOC101163579
Erythropoietin receptor.
  
  
  0.436
LOC110015368
Family with sequence similarity 20 member C, like.
    
  0.431
LOC101164404
Fam20C domain-containing protein.
    
  0.431
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.