STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scube2Signal peptide, CUB domain, EGF-like 2. (1020 aa)    
Predicted Functional Partners:
mmp9
Uncharacterized protein.
   
 0.631
H2M348_ORYLA
Tudor-knot domain-containing protein.
    
 0.552
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.552
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.514
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.512
ENSORLP00000032656
Uncharacterized protein.
   
 0.472
b4galt7
Uncharacterized protein.
     
 0.467
LOC101156669
Matrix metallopeptidase 13b.
   
 0.438
LOC101156910
Matrix metallopeptidase 20a (enamelysin).
   
 0.438
coll
Collagenase.
   
 0.438
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.