scube2 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

scube2

Signal peptide, CUB domain, EGF-like 2. (1020 aa)

Predicted Functional Partners:

shh

0.754

H2M348_ORYLA

0.643

arid4b

0.643

mmp9

0.621

irx3

0.616

LOC101167616

0.613

LOC101170159

0.603

LOC100125500

0.603

sall4

0.592

disp2

0.557

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2M348_ORYLA	LOC101167616	ENSORLP00000012849	ENSORLP00000020709	Tudor-knot domain-containing protein.	Usher syndrome 1C.	0.556
H2M348_ORYLA	arid4b	ENSORLP00000012849	ENSORLP00000042709	Tudor-knot domain-containing protein.	Translocase of outer mitochondrial membrane 20.	0.778
H2M348_ORYLA	irx3	ENSORLP00000012849	ENSORLP00000017212	Tudor-knot domain-containing protein.	Iroquois homeobox 3a.	0.608
H2M348_ORYLA	sall4	ENSORLP00000012849	ENSORLP00000020188	Tudor-knot domain-containing protein.	Spalt-like transcription factor 4.	0.715
H2M348_ORYLA	scube2	ENSORLP00000012849	ENSORLP00000008767	Tudor-knot domain-containing protein.	Signal peptide, CUB domain, EGF-like 2.	0.643
LOC100125500	disp2	ENSORLP00000041999	ENSORLP00000019444	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Dispatched homolog 2 (Drosophila).	0.867
LOC100125500	scube2	ENSORLP00000041999	ENSORLP00000008767	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Signal peptide, CUB domain, EGF-like 2.	0.603
LOC101167616	H2M348_ORYLA	ENSORLP00000020709	ENSORLP00000012849	Usher syndrome 1C.	Tudor-knot domain-containing protein.	0.556
LOC101167616	arid4b	ENSORLP00000020709	ENSORLP00000042709	Usher syndrome 1C.	Translocase of outer mitochondrial membrane 20.	0.556
LOC101167616	irx3	ENSORLP00000020709	ENSORLP00000017212	Usher syndrome 1C.	Iroquois homeobox 3a.	0.748
LOC101167616	sall4	ENSORLP00000020709	ENSORLP00000020188	Usher syndrome 1C.	Spalt-like transcription factor 4.	0.884
LOC101167616	scube2	ENSORLP00000020709	ENSORLP00000008767	Usher syndrome 1C.	Signal peptide, CUB domain, EGF-like 2.	0.613
LOC101170159	disp2	ENSORLP00000002065	ENSORLP00000019444	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Dispatched homolog 2 (Drosophila).	0.867
LOC101170159	scube2	ENSORLP00000002065	ENSORLP00000008767	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	Signal peptide, CUB domain, EGF-like 2.	0.603
arid4b	H2M348_ORYLA	ENSORLP00000042709	ENSORLP00000012849	Translocase of outer mitochondrial membrane 20.	Tudor-knot domain-containing protein.	0.778
arid4b	LOC101167616	ENSORLP00000042709	ENSORLP00000020709	Translocase of outer mitochondrial membrane 20.	Usher syndrome 1C.	0.556
arid4b	irx3	ENSORLP00000042709	ENSORLP00000017212	Translocase of outer mitochondrial membrane 20.	Iroquois homeobox 3a.	0.608
arid4b	sall4	ENSORLP00000042709	ENSORLP00000020188	Translocase of outer mitochondrial membrane 20.	Spalt-like transcription factor 4.	0.715
arid4b	scube2	ENSORLP00000042709	ENSORLP00000008767	Translocase of outer mitochondrial membrane 20.	Signal peptide, CUB domain, EGF-like 2.	0.643
disp2	LOC100125500	ENSORLP00000019444	ENSORLP00000041999	Dispatched homolog 2 (Drosophila).	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.	0.867