STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCKARCholecystokinin A receptor; Belongs to the G-protein coupled receptor 1 family. (444 aa)    
Predicted Functional Partners:
CCK
Cholecystokinin.
   
 0.989
LOC101167231
Gastrin domain-containing protein.
   
 0.989
LOC101161683
G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.
  
  
 
0.903
LOC101175467
Si:dkey-1h24.2; Belongs to the G-protein coupled receptor 1 family.
  
  
 
0.903
LOC105354756
Gastrin domain-containing protein.
     
  0.900
LOC101168718
Uncharacterized protein.
    
 0.853
LOC101168962
Guanine nucleotide binding protein (G protein), alpha 14a.
    
 0.853
LOC101161353
Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).
    
 0.853
LOC101158934
Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).
    
 0.853
LOC101168199
WD_REPEATS_REGION domain-containing protein.
    
  0.789
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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