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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156569Troponin I type 1b (skeletal, slow). (185 aa)    
Predicted Functional Partners:
LOC101171215
Troponin C type 1b (slow).
   
 0.927
LOC101174831
Troponin C type 1a (slow).
   
 0.927
LOC105354378
Troponin T type 2a (cardiac).
 
 0.888
LOC101171577
Si:rp71-17i16.4.
   
 0.884
LOC101171829
Troponin C type 2 (fast).
   
 0.884
H2MP59_ORYLA
Troponin T2c, cardiac.
 
 0.870
H2LPE6_ORYLA
Troponin T type 2b (cardiac).
 
 0.869
LOC101160231
Uncharacterized protein.
 
 0.866
LOC101158987
Uncharacterized protein.
 
 0.862
LOC101157127
Troponin T type 3a (skeletal, fast).
 
 0.860
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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