Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbpjRecombination signal binding protein for immunoglobulin kappa J region. (487 aa)    
Predicted Functional Partners:
maml2
MamL-1 domain-containing protein.
   
 0.999
ENSORLP00000033689
Uncharacterized protein.
   
 0.999
maml1
Mastermind-like transcriptional coactivator 1.
   
 0.999
notch1
Notch receptor 1b.
   
 0.998
snw1
SNW domain containing 1.
   
 0.998
LOC101171596
Notch receptor 1a.
   
 0.998
LOC101162450
Notch receptor 3.
    
 0.994
spen
Si:ch1073-335m2.2.
    
 0.992
LOC101159000
Spen family transcriptional repressor.
    
 0.992
hes1
Her6.1.
    
 0.991
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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