close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc1a5Solute carrier family 1 member 5. (527 aa)    
Predicted Functional Partners:
slc3a2
Solute carrier family 3 member 2a.
   
 
 0.698
slc7a7
Solute carrier family 7 member 7.
   
  
 0.680
slc7a5
Solute carrier family 7 member 5.
   
  
 0.565
mtr
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.476
Rhoh
Ras homolog family member H.
    
 0.438
rhoq
Ras homolog family member Q.
    
 0.438
lamtor1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
     
 0.417
tmem59
Transmembrane protein 59.
    
  0.410
uaca
Uveal autoantigen with coiled-coil domains and ankyrin repeats b.
   
 
  0.404
SLC43A2
Solute carrier family 43 member 2a.
    
 
 0.403
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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