Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
c12h9orf16Expressed sequence BC139872. (117 aa)    
Predicted Functional Partners:
atp6v1d
ATPase H+ transporting V1 subunit D.
    
 
 0.962
lrrc73
Leucine rich repeat containing 73.
      
 0.613
cnst
Consortin_C domain-containing protein.
    
   0.613
LOC105357188
Consortin, connexin sorting protein b.
    
   0.613
ankrd13d
Ankyrin repeat domain 13 family, member D.
      
 0.587
tepsin
TEPSIN adaptor related protein complex 4 accessory protein.
      
 0.587
vsig10
Uncharacterized protein.
   
  
 0.561
ENSORLP00000029707
Uncharacterized protein.
    
   0.518
Cep290
Uncharacterized protein.
    
   0.518
ENSORLP00000044416
Uncharacterized protein.
    
   0.518
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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