Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
surf2Surfeit 2. (242 aa)    
Predicted Functional Partners:
surf4
Surfeit 4.
      
 0.907
LOC101163261
SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.
      
 0.883
surf6
Surfeit 6.
      
 0.767
med22
Mediator complex subunit 22.
   
  
 0.731
RPL7A
Ribosomal protein L7a.
   
  
 0.723
prepl
Prolyl endopeptidase like.
      
 0.716
RPL5
Ribosomal protein L5b.
    
   0.716
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
    
   0.716
LOC101160347
Ribosomal protein L5.
    
   0.716
rusc1
Uncharacterized protein.
      
 0.608
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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