STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
surf2Surfeit 2. (242 aa)    
Predicted Functional Partners:
surf4
Surfeit 4.
      
 0.667
LOC101163261
SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.
      
 0.634
med22
Mediator complex subunit 22.
   
  
 0.571
surf6
Surfeit 6.
      
 0.559
prepl
Prolyl endopeptidase like.
      
 0.558
clcc1
Uncharacterized protein.
      
 0.442
nexn
Ig-like domain-containing protein.
      
 0.424
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.