STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168301AA_permease_C domain-containing protein. (606 aa)    
Predicted Functional Partners:
oip5
Opa interacting protein 5.
      
 0.578
elf4
E74-like ETS transcription factor 1.
      
 0.499
egr2
Early growth response 2b.
    
 
 0.464
slc3a1
Solute carrier family 3 member 1.
   
 0.458
slc1a5
Solute carrier family 1 member 5.
   
 
 0.425
slc1a4
Amino acid transporter.
   
 
 0.425
pcsk2
Proprotein convertase subtilisin/kexin type 2; Belongs to the peptidase S8 family.
   
  
 0.420
LOC105354918
Si:ch211-153b23.3.
   
 0.416
LOC101161367
GTP cyclohydrolase 2.
     
 0.402
LOC101168423
GTP cyclohydrolase 1.
     
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.