Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2LRZ8_ORYLAPOU domain protein. (155 aa)    
Predicted Functional Partners:
sp1
Sp1 transcription factor.
    
 0.786
snapc4
Small nuclear RNA activating complex, polypeptide 4.
    
  0.725
pou2af1
Uncharacterized protein.
    
 
 0.711
c13h11orf53
Si:ch211-213d14.1.
    
 
 0.686
ENSORLP00000033238
Uncharacterized protein.
    
  0.670
snapc2
Uncharacterized protein.
    
  0.667
H2M5F5_ORYLA
Uncharacterized protein.
    
 0.666
snapc1
Small nuclear RNA activating complex, polypeptide 1b.
    
 0.666
brca1
Uncharacterized protein.
    
   0.615
LOC110014056
Uncharacterized protein.
    
  0.608
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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