Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
anxa6Annexin. (699 aa)    
Predicted Functional Partners:
trpc1
Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.778
tbc1d5
TBC1 domain family, member 5.
    
   0.711
H2LE95_ORYLA
Dysferlin, limb girdle muscular dystrophy 2B (autosomal recessive).
   
 0.655
myof
Myoferlin.
   
 0.655
LOC101156429
Myoferlin like.
   
 0.655
efcc1
EF-hand and coiled-coil domain containing 1.
      
 0.639
draxin
Dorsal inhibitory axon guidance protein.
      
 0.639
ncan
Neurocan b.
      
 0.635
LOC110017390
Potassium voltage-gated channel, subfamily G, member 2; Belongs to the potassium channel family.
      
 0.635
LOC101167816
Angiopoietin-like 5.
      
 0.634
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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