STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158134Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily. (385 aa)    
Predicted Functional Partners:
slc40a1
Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.
  
  
 
0.903
LOC101171566
Ceruloplasmin; Belongs to the multicopper oxidase family.
    
 0.626
ENSORLP00000034462
Uncharacterized protein; Belongs to the multicopper oxidase family.
    
 0.626
LOC101155535
Hephaestin-like 1b; Belongs to the multicopper oxidase family.
    
 0.626
LOC101174928
Coagulation factor VIII, procoagulant component; Belongs to the multicopper oxidase family.
    
 0.586
edil3
EGF-like repeats and discoidin I-like domains 3a.
    
 0.586
LOC101166425
Coagulation factor V; Belongs to the multicopper oxidase family.
    
 0.586
nrp2
Neuropilin; Belongs to the neuropilin family.
    
 0.485
RS1
Retinoschisin 1.
    
 0.485
LOC101172397
Neuropilin; Belongs to the neuropilin family.
    
 0.485
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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