STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmotRNA methyltransferase O. (424 aa)    
Predicted Functional Partners:
hsbp1
Heat shock factor binding protein 1a.
    
   0.766
tango2
Transport and golgi organization 2 homolog (Drosophila).
      
 0.716
LOC101166537
Cytochrome c oxidase assembly factor COX18.
      
 0.710
timm21
Translocase of inner mitochondrial membrane 21.
      
 0.708
ube2w
UBIQUITIN_CONJUGAT_2 domain-containing protein.
      
 0.700
tomm22
Translocase of outer mitochondrial membrane 22 homolog (yeast).
      
 0.592
LOC101158122
Poly [ADP-ribose] polymerase.
    
   0.583
LOC105353570
Poly [ADP-ribose] polymerase.
    
   0.583
LOC101161427
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).
  
  
 0.569
ankzf1
Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.
      
 0.559
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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