STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cog7Component of oligomeric golgi complex 7. (769 aa)    
Predicted Functional Partners:
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.999
cog2
Component of oligomeric golgi complex 2.
   
 0.999
cog4
Component of oligomeric golgi complex 4.
   
 0.999
cog1
Component of oligomeric golgi complex 1.
   
 0.999
cog3
Component of oligomeric golgi complex 3.
   
 0.999
cog8
Component of oligomeric golgi complex 8.
   
 0.999
COG5
Component of oligomeric golgi complex 5.
   
 0.999
stx16
Syntaxin 16; Belongs to the syntaxin family.
     
 0.961
smim7
Small integral membrane protein 7.
   
 0.953
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
     
 0.951
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.