Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
alkbh2AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase. (299 aa)    
Predicted Functional Partners:
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
      
 0.914
iars2
Isoleucyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.879
pars2
Prolyl-tRNA synthetase 2, mitochondrial.
      
 0.865
alkbh8
AlkB homolog 8, tRNA methyltransferase.
      
 0.863
mettl4
Methyltransferase like 4; Belongs to the MT-A70-like family.
      
 0.798
eprs1
Glutamyl-prolyl-tRNA synthetase.
     
 0.749
H2MJS7_ORYLA
AlkB homolog 6.
      
 0.738
yars1
Tyrosine--tRNA ligase.
  
  
 0.736
dars1
Aspartyl-tRNA synthetase.
      
 0.733
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
   
  
 0.726
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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