STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkbh2AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase. (299 aa)    
Predicted Functional Partners:
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
   
  
 0.817
mettl4
Methyltransferase like 4; Belongs to the MT-A70-like family.
      
 0.801
gbe1
Glucan (1,4-alpha-), branching enzyme 1b.
  
 
 0.755
pgghg
Protein-glucosylgalactosylhydroxylysine glucosidase.
  
 
 0.674
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
      
 0.668
yipf6
Protein YIPF.
  
 
 0.667
gne
Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.
  
 
 0.648
iars2
Isoleucyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.640
pars2
Prolyl-tRNA synthetase 2, mitochondrial.
      
 0.634
LOC101173617
Malate synthase-like.
   
  
 0.612
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.