Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
prdm12PR domain zinc finger protein 12; Involved in the positive regulation of histone H3-K9 dimethylation; Belongs to the class V-like SAM-binding methyltransferase superfamily. (379 aa)    
Predicted Functional Partners:
mcf2
MCF.2 cell line derived transforming sequence a.
      
 0.670
hmgxb4
HMG box domain containing 4a.
      
 0.665
cdc42se1
CRIB domain-containing protein.
      
 0.619
p2rx3
P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.
      
 0.584
phox2b
Paired like homeobox 2Bb.
      
 0.543
LOC101165998
Dorsal root ganglia homeobox.
    
 
 0.500
ccr6
C-C motif chemokine receptor 6; Belongs to the G-protein coupled receptor 1 family.
      
 0.498
en1
Homeobox protein engrailed-like.
      
 0.487
rab10
RAB10, member RAS oncogene family.
     
 0.484
STK32A
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
      
 0.475
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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