STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101157966Leucine-rich, glioma inactivated 1a. (543 aa)    
Predicted Functional Partners:
adam23
ADAM metallopeptidase domain 23.
     
 0.653
ADAM11
ADAM metallopeptidase domain 11.
     
 0.582
adam22
ADAM metallopeptidase domain 22.
     
 0.582
LOC101159950
Uncharacterized protein.
     
 0.582
cadm3
Cell adhesion molecule 3.
      
 0.510
LOC101170837
Uncharacterized protein.
      
 0.502
LOC101160640
Neuroplastin b.
      
 0.502
LOC101170789
Uncharacterized protein.
      
 0.480
LOC101170109
Neurexophilin; May be signaling molecules that resemble neuropeptides.
  
    0.439
cd2
Ig-like domain-containing protein.
      
 0.426
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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