STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pxmp2Peroxisomal membrane protein 2; Belongs to the peroxisomal membrane protein PXMP2/4 family. (195 aa)    
Predicted Functional Partners:
pex19
Peroxisomal biogenesis factor 19.
    
 0.978
pex3
Peroxisomal biogenesis factor 3.
   
 
 0.874
pex16
Peroxisomal membrane protein PEX16.
   
 
 0.870
pxmp4
Peroxisomal membrane protein 4; Belongs to the peroxisomal membrane protein PXMP2/4 family.
     
 0.830
LOC101171574
Peroxisomal biogenesis factor 11 alpha.
   
 
 0.793
pex11b
Peroxisomal biogenesis factor 11 beta.
   
 
 0.793
snx15
Sorting nexin 15.
      
 0.736
pex13
Peroxisomal biogenesis factor 13.
   
 
 0.735
pex6
Peroxisomal biogenesis factor 6.
     
 0.732
LOC101166202
ATP binding cassette subfamily D member 1.
     
 0.727
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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