Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WDR33WD repeat domain 33. (1058 aa)    
Predicted Functional Partners:
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.999
sympk
Symplekin.
    
 0.999
cpsf3
Cleavage and polyadenylation specific factor 3.
   
 0.999
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.999
LOC101159890
FIP1 like 1b (S. cerevisiae).
   
 0.999
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.998
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
    
 0.996
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
    
 0.987
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 0.978
papolg
Poly(A) polymerase gamma.
   
 0.975
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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