STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LSA7_ORYLANoggin; Belongs to the noggin family. (215 aa)    
Predicted Functional Partners:
bmp4
Bone morphogenetic protein 4.
    
 0.947
Nog
Noggin; Belongs to the noggin family.
  
  
0.906
chrd
Chordin; Belongs to the chordin family.
      
 0.869
LOC101173146
Bone morphogenetic protein 7b.
    
 0.845
bmp2
TGF_BETA_2 domain-containing protein.
    
 0.844
bmp6
Bone morphogenetic protein 6.
    
 0.842
LOC101163346
Bone morphogenetic protein 16.
    
 0.818
bmp5
Bone morphogenetic protein 5.
    
 0.808
LOC101170375
Anti-dorsalizing morphogenic protein.
    
 0.795
rspo1
Uncharacterized protein.
      
 0.746
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.