Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sft2d3Vesicle transport protein; May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex. Belongs to the SFT2 family. (222 aa)    
Predicted Functional Partners:
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 
 0.831
dusp28
Dual specificity phosphatase 28.
      
 0.758
LOC101174545
Si:dkey-69o16.5.
      
 0.753
WDR33
WD repeat domain 33.
      
 0.672
LOC101173972
Si:ch1073-184j22.1.
      
 0.662
zc3h15
Zinc finger CCCH-type containing 15.
      
 0.639
eos2
IKAROS family zinc finger 4.
      
 0.615
proc
Protein C (inactivator of coagulation factors Va and VIIIa), a.
      
 0.613
ikzf4
Uncharacterized protein.
      
 0.605
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 
 0.604
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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