Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EFEMP1EGF containing fibulin extracellular matrix protein 1. (524 aa)    
Predicted Functional Partners:
LOC101167732
Microfibril associated protein 5.
   
 
 0.641
MFAP2
Microfibril associated protein 2.
   
 
 0.636
LOC101162553
Collagen, type VI, alpha 2.
   
 0.635
ric8a
RIC8 guanine nucleotide exchange factor A.
    
  0.619
LOC101159701
Peptidylprolyl isomerase.
   
 0.574
fkbp10
Peptidylprolyl isomerase.
   
 0.574
mmp14
ZnMc domain-containing protein.
   
 0.571
LOC101171509
Uncharacterized protein.
   
 0.566
prrx1
Paired related homeobox 1a.
   
 0.498
col6a1
Collagen, type VI, alpha 1.
   
 0.489
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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