STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf8PHD finger protein 8. (1015 aa)    
Predicted Functional Partners:
suv39h1
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
    
 0.794
arid5b
AT-rich interaction domain 5B.
    
 0.701
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.689
LOC101168105
Zgc:77151.
    
 0.678
LOC101161462
Uncharacterized protein.
 
 
 0.678
jarid2
Jumonji, AT rich interactive domain 2b.
   
 0.614
sirt1
Deacetylase sirtuin-type domain-containing protein.
    
 
 0.560
H3-3B
Histone H3; Belongs to the histone H3 family.
    
 0.536
H2L503_ORYLA
Histone H3; Belongs to the histone H3 family.
    
 0.536
H2L5L2_ORYLA
Histone H3; Belongs to the histone H3 family.
    
 0.536
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.