STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tm4sf5Transmembrane 4 L six family member 5. (203 aa)    
Predicted Functional Partners:
c14h11orf54
Zgc:85789.
      
 0.626
slc38a9
Solute carrier family 38 member 9.
   
 
 0.619
vstm5
Uncharacterized protein.
      
 0.555
glyctk
Glycerate kinase.
      
 0.503
TMEM74-2
Transmembrane protein 74.
      
 0.502
LOC101157772
Tetraspanin.
      
 0.498
itga2
Integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2; Belongs to the integrin alpha chain family.
      
 0.491
SMCO4
Single-pass membrane protein with coiled-coil domains 4.
      
 0.466
LOC101160985
Fatty acid binding protein 1b, tandem duplicate 1.
   
    0.429
a1cf
Apobec1 complementation factor.
   
    0.417
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.